rs50396969 SNP Detail

Summary

• ID
  rs50396969
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68954376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG CAATTTAGAG GCCAGCATAG
  W
  CTATACCATG AGTTTGAGGA CAGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135264706	ENSMUSSNP2731233	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320791805	CHEV_3_68850965	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50396969					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68954376 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	1519 bp distal
Gm65005	predicted gene, 65005	676 bp downstream
Rr578119	regulatory region 578119	1911 bp distal
Rr578121	regulatory region 578121	790 bp distal
Rr578122	regulatory region 578122	1679 bp distal
Rr578123	regulatory region 578123	within coordinates
Tssr29529	transcription start site region 29529	1956 bp downstream
Tssr29530	transcription start site region 29530	1907 bp downstream