rs50396839 SNP Detail

Summary

• ID
  rs50396839
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136038110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCGGAG GTGGCCACGC
  GGCGGGAGGC CTAGATTTTT CAACCTCTTA ACGGTGGTAG AAGAAGAGGG AGGAGCTTCG
  GCCACGCAAG GCCCGCTGCC CCGCAGCCTC GCCACTACCA GGGGCTCCCA CCAACAGACC
  CCTTTGTGTG CATGCCCCCG CCCCGGAGGC GCCGCAGCCA GTGGCGCTGA GACCCCTCAT
  K
  GGCTCAGCCC GACGGCCACA CCGATTGGTC CTCGGAGTCC CCGACGTGAG GGCCGCTTTC
  CCCTCTCTCT TATTGGCCCG TCAAGCTGCC CGTCATACGG TCTCGTGGGC CGATTGGTCG
  GCCGCACGGA GTCCCTGGAA GCAGTTCCGG GAAACCCCGC GTGCTGCCGG GATCGCGTCT
  CGGTCCATGC GAGGGGGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147565135	ENSMUSSNP6136353	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50396839					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136038110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15109	CpG island 15109	within coordinates
Hnrnpr	heterogeneous nuclear ribonucleoprotein R	143 bp upstream
Rr367756	regulatory region 367756	within coordinates
Rr602347	regulatory region 602347	within coordinates
Rr602348	regulatory region 602348	237 bp proximal
Tssr39700	transcription start site region 39700	137 bp upstream
Tssr39701	transcription start site region 39701	153 bp upstream
Tssr39702	transcription start site region 39702	192 bp upstream