rs50391865 SNP Detail

Summary

• ID
  rs50391865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:71851693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATATTGGT GTTCTATATA
  TGAGTGAGAC ATATTAGAGT GGCTCTCAGG CTGTGGTGCA GCTGGTCCTC CAATGACTGT
  CTGCCAGCGG AAGACCCAAC AGTCCAGCAG TTGTTCAGTC CATGAGACTG GATGTCTCAG
  CTTCTCCTTA GCAGGCACCA TAATCATGAA GAAGTAGGCT CTGATGCCAG TGAAGGAGCA
  R
  ACTTGCTAAA TAGAGCAGAG CAAGGGCAAG CAAGCAAAGT GTCCCTTCTC TCATGTCCTT
  CACCTAGGCT GCAGGCAGAG GGCCCAGGGT AAAGGTGGAT TCTACCCACA TCAGAGATCT
  GGGCTAAAAG TGCATCTTCC CACTTCAAAT GATTTAATTA AGAAAAAAAT CCCTCTGGGC
  AGTGGTGGCG CACGCCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145146219	ENSMUSSNP6226346	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50391865					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71851693 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Babam1	BRISC and BRCA1 A complex member 1			Intron
				Noncoding-Transcript-Variant
Cpgi20525	CpG island 20525			1900 bp distal