rs50385914 SNP Detail

Summary

• ID
  rs50385914
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130053322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TAATCTAATT ACTAGCATTG CTAGTATTAT TCTGAATAAG
  AGGGGAGAGG GGTAGCATTC TGTTTCTTTC CCAAGTTTAA AGGAAATTGA GGTTAAAAAA
  R
  TAAAAAAAAA TTAAGAGCTG TAATATTTCA GTATTACATA CCAGGGTCTA TGCATCTCTC
  TTAAGAGAAC TCTACAGTGC TGTTTTTTCT CATATCTTCC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135893348	ENSMUSSNP5986401	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50385914					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130053322 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585149	regulatory region 585149	200 bp proximal
Rr585150	regulatory region 585150	619 bp proximal