rs50385054 SNP Detail

Summary

• ID
  rs50385054
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69551635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACC ATTTCCTAGC AATGTTTGCA
  T
  TTTTTAAAAG ATATATCTGT TCATT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146730113	ENSMUSSNP5608994	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320332112	CHEV_2_69559348	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50385054					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69551635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11715	CpG island 11715	1302 bp proximal
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	1517 bp upstream
Rr397018	regulatory region 397018	1316 bp upstream
Rr558457	regulatory region 558457	1024 bp proximal
Rr558458	regulatory region 558458	1482 bp proximal
Rr558459	regulatory region 558459	1813 bp proximal
Tssr18132	transcription start site region 18132	1506 bp upstream
Tssr18133	transcription start site region 18133	1569 bp upstream
Tssr18134	transcription start site region 18134	1748 bp upstream
Tssr18135	transcription start site region 18135	1780 bp upstream
Tssr18136	transcription start site region 18136	1957 bp upstream
Tssr24445	transcription start site region 24445	1456 bp downstream