rs50380687 SNP Detail

Summary

• ID
  rs50380687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153397477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCACCA AACGTCAGGA
  AACCACCAGC ACAAAGGCAG TGCTTTTGGC ACAGACATGT TTTTTATCTT GAGCAACCCT
  ACAGAGTCAC TTGCTTCTCT CTTATCTGTC TTACAAGGCA GCAGCCATCA GCAGGCCAAC
  CTCAGCTGAG CTCAGCTGTC GCAGCACAAG GTCAGTTTCT ACCTCCAATT ACAATGGGGA
  R
  GCCTTGATAT ACATCAGGAT ACAATTAACC CAGAAAGGGG TTACATCCCA GAAACACGAT
  CCCAACTGGT GGACCTCAGA GGAGCTTCAA ACGGTCTGTG AAACCCCACA AACTTGACAA
  CACAGAGCTA GGATCCCACC TGGTTGGCCT CAGTGGGGCT TCAAAGGGCC CGCAAATCCC
  TACAAGCGCC ACATAAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136111020	ENSMUSSNP1469054	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50380687					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153397477 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587732	regulatory region 587732			1009 bp distal
Rr587733	regulatory region 587733			within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant