rs50379874 SNP Detail

Summary

• ID
  rs50379874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:8603957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCACGAG GCAGAGGCAG
  GTGTGAGAGC CACTTGGTTC TTGCAGTCTT CCCTGCTCCA TCCCTCTCAC CCCTAGAACA
  AATAGGCAGG GCCACTTTGT CCCCAGCAGC TCCAGGCTGA GGCTCTCCCC TTATTTGAAC
  AAAACCATCT GGCACCACAG GAGCCAGGGA ACTGAAGTTC CCAAGACACG TGGTTCTGAC
  R
  ACGGGCAGAA CGTGGCGGAA ACAACGAAAG GCCAGACGGT AATTCCAGAG GTTAAAGGGA
  CACGGGACAA TAGAGATCAT AGTCAGACAA AAGTCTCTGT CAGCTCAGCC ACACTCACCC
  TCCCAGCTCA TCCTGGCACC AAGAACTGAC CCAGTCTGCC TGGAGCAGGG CTGGGTTGGC
  AGTGTGGTGC ATGGCTGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss131662724	ENSMUSSNP600679	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50379874					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:8603957 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr442578	regulatory region 442578			within coordinates
Rr442579	regulatory region 442579			407 bp distal
Tns3	tensin 3			Intron
				Noncoding-Transcript-Variant
Tssr100310	transcription start site region 100310			1662 bp upstream
Tssr106844	transcription start site region 106844			769 bp upstream