rs50378436 SNP Detail

Summary

• ID
  rs50378436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116123874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCATACTT CCGTTTGCTC
  TCAAAGTAGG AGAGATGGCA AGACAACCAA AGGAAACCTT TCTTCCCGTC TGTCAGCACT
  TCAGCCAGAG CTCCCATCTC GGCTTGGCAT GCCTTGAACC GGCCAGATGT CTTCCCTGAC
  AGCAGAGTCT CTGGTGCATT CCCTTCAGAG CCCTGAGGAC CAGCAGAGGC TCTTCCTCCA
  Y
  GGGCCTCCGT CCTCCCAACT CCCCTTTGTT TCTTTCATCC CTCAGCCTCA AAGGAACCCA
  CTACCTTCTC CATCGCCCTC TGCATCCTTC GTTGCTGTCT TTCTTCTTAG TCTCACTGTA
  GCAAACTCCC TGTACTAAAT TTCCTCTGAA TGCCTAACAT CAAGAACTCT GATGACAGAT
  GCTGTTGGAG ACGTGTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60437506	NES15945736	PERLEGEN	MM_PANEL2	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs50378436					SNP	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437506	NES15945736	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116123874 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Rr375619	regulatory region 375619			within coordinates
Rr397962	regulatory region 397962			1761 bp upstream
Rr583694	regulatory region 583694			339 bp distal
Rr583695	regulatory region 583695			1646 bp proximal
Rr583696	regulatory region 583696			1772 bp proximal
Rr583697	regulatory region 583697			1998 bp proximal