rs50377887 SNP Detail

Summary

• ID
  rs50377887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:88039241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATATGAGC ATCTTATGAT
  CTAATAAACA ACTATTGCAG AAAATGAAGA TGGTGATGAT CACCAGCTGT TTCAAAAACC
  CAAAGGATGG GGTTAGGCAG CTCCTGGGGC TGACTGTGCA GAAGCCCCCG GGGCGAGGGT
  TGCACACCTG CTAGGATGTA TGAGCCTAGA GTGAAGAAGC TCTGAGCCTC TCTCCACACT
  R
  CACCCCATGC TCTCTAATGG TATTCTCCAT GCATGCTCTA CTATAACTGA TGGGCGTCAA
  CAAGTGCTTC CCTGGGTTTT GTGAGGTTTC TTCTTCAAGT TTAATGGTTT TAGTTCTTTT
  TAGGGTTCCG GTAGATGTTA TAACCCATTG AATTAGAACA GTATTTGAGA ATCCTGTTGA
  GAGGTCTGTA TAGATTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss133364822	ENSMUSSNP4502706	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50377887					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:88039241 () rs orientation: forward

Symbol	Name	Function Class
Rr633809	regulatory region 633809	621 bp distal
Rr633810	regulatory region 633810	195 bp proximal
Tssr1927	transcription start site region 1927	1386 bp downstream
Tssr57564	transcription start site region 57564	1370 bp downstream
Tssr57565	transcription start site region 57565	1329 bp downstream