rs50375783 SNP Detail

Summary

• ID
  rs50375783
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77592427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGCCCTG TAGGTAGGCA TTGCTGGGTT CAGTCCTGGA
  GCACATTGGT ACCCAATGGC TTTGCCCACG GCCTTGATGG ATCAGACTGG GAATGTAAAT
  C
  GTGGATTCCC AGCTCCAAGT GTGGAATGTT TGCAGTCATC CCCGGGCTTA CGCTTACGTG
  ATGCATCAAG CTGCTACCTA GCAGATCAGC AGGAGGCCA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147551907	ENSMUSSNP4485843	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325701898	CHEV_18_77743470	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50375783					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77592427 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Rr541133	regulatory region 541133			208 bp proximal