rs50374828 SNP Detail

Summary

• ID
  rs50374828
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124067678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATATATA TATATATATA
  TATATATATA TATATATCCA TTCATGTGTG TGTGATATGC ATACTACAGT GTGGATGTGC
  ACAGCAGAGT ATGGATTCAG GGTGTCACTT TTCACTTTCC ACCCTGTTAG AGGCAAGGTC
  TCTCTTGTTT CTGTGACTGC CTGTAGATGA ACACTGTAGC ATTTACCTTC TTACATAGGT
  S
  CTGGGCTCTG ATTTCAGGTT GTCGAGTTTG CCCAGAAAGT ACTTTGCCCC ACTAAGCCCG
  CTCTCTGGCT CCAAATCAGC AATGGACTTT TAATTTCTCT ATACTTTTCT GCTTGTAATT
  CTTAATGCTG ATTATTGAAG TGACAGGACC CAGAATCACC AGGAAAACAA AACTGTGAGT
  GTGCATAAGG GGTTTGTAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss60445698	NES15938222	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C			C	C
ss135783762	ENSMUSSNP1275894	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					G
ss320926851	CHEV_3_123976947	CHEVERUD	SCREENING_POP	f	SNP							G			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs50374828					SNP	C	C	G	C	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445698	NES15938222	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124067678 () rs orientation: forward

Symbol	Name	Function Class
Gm43731	predicted gene 43731	within coordinates
Rr584584	regulatory region 584584	669 bp distal
Rr584585	regulatory region 584585	866 bp proximal