rs50367783 SNP Detail

Summary

• ID
  rs50367783
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131142757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCGAGTTG CCCAAGGTCA GAAAGGAAAC AGCAAATCTT
  AAACCTGATG GAGGTTTAGC ATCTATCTTT AATAGATTAA ATTCTTTTAA ACACTAAAGC
  T
  CACACATAAA CTTAGATATA TTTTTAAAGC TGTATTTACC CAGTTAATAA ACCTTATCAT
  GAAGGCGTCA CATGCATGGA CGGGCAGATT TATGCCAGG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135904069	ENSMUSSNP3518634	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50367783					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131142757 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66385	predicted gene, 66385			within coordinates
Rr585342	regulatory region 585342			within coordinates
Rr585343	regulatory region 585343			1104 bp distal
Sgms2	sphingomyelin synthase 2			Intron
				Noncoding-Transcript-Variant