rs50361314 SNP Detail

Summary

• ID
  rs50361314
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127624860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCGCATG ATCAAGTATG
  AAAATGAGAG TTTTGGACCA ACTATTCAAA ATCACTGAGA GAAACAACCA AATGTGTAGA
  CTAATATTTA CTGTATTTAA AGTAGTTACT GAGGAACACG AACACAAATT CTTCCCTTGA
  ATCTAGCCAC CATAGAAAGC TTGCTTCCAG TGGTAGGAAC CACAAGAGTC TGAGGGAGCT
  K
  CGAGGGGAGG GGGTGAGGCA GAGTGAGCAC GTGAATGATG CATGCAATCA ACCTGAGGCT
  GCGGGTAAGG CCGTGGGAGC TGGGCCTGGG GTGCTGCCCC CTGGAGAAGC AGATAAGCAA
  ATACCTGGAA GATAAAGCAG AATCTGATCT AGGAGAAGGG TTAGACAATG AGACGCAGGG
  AGGCAGGGTC AGAATTGAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135872351	ENSMUSSNP3292835	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320957271	CHEV_3_127534129	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50361314					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127624860 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	within coordinates
Rr584871	regulatory region 584871	650 bp distal
Rr584872	regulatory region 584872	within coordinates