rs50359078 SNP Detail

Summary

• ID
  rs50359078
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGTGCA TACACACATG
  CAGGCAAAAC ACTCACTCAC ATGCCTATAT GTACATGCAT GCACACACAT GCACACTCAC
  ATGCACACGT GCACACACGA GCATCCACAG GCACATGCAC ACATGCTTGT GTGCACATAC
  CAGGCATGGT GAAGAATACT ATAATCCCAA CACTGGGTAG ATGGAGACAG CCAGCCTAGC
  A
  TTGCGGGTGA ATCCTGGGTT CCAGTGAGAG ACCTTGCAGC AAAACTCAAG GTAGATCTAG
  GAGGATACAA GCTGGCATTC AACTGAGCCA GCAACTGGCC CCCTCCACAG TTCTTGCTAT
  GTCTTCATAG CAAATTCCTC TGTTAGAGGT AATGCTGTGT GGAATGGTGT CTTAGCTAGG
  GTTTCGTTGC TATGAAGAGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147553128	ENSMUSSNP7085090	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs50359078					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621857 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	848 bp upstream
Rr602181	regulatory region 602181	1397 bp distal
Rr602182	regulatory region 602182	1081 bp distal
Rr602183	regulatory region 602183	445 bp proximal
Rr602184	regulatory region 602184	859 bp proximal
Rr602185	regulatory region 602185	1425 bp proximal
Tssr39650	transcription start site region 39650	634 bp upstream
Tssr39651	transcription start site region 39651	838 bp upstream
Tssr39652	transcription start site region 39652	868 bp upstream