rs50357556 SNP Detail

Summary

• ID
  rs50357556
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30910083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGA GGGGACTCAC CTGGGGCGGG
  T
  GGGGCGTGGG TGGGCGGGGC GAGCG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134733972	ENSMUSSNP5605967	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320694177	CHEV_3_30754856	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50357556					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30910083 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42199	predicted gene, 42199			within coordinates
Gpr160	G protein-coupled receptor 160			Intron
				mRNA-UTR
Rr574830	regulatory region 574830			1123 bp distal
Rr574831	regulatory region 574831			24 bp distal
Rr574832	regulatory region 574832			within coordinates
Rr574833	regulatory region 574833			92 bp proximal
Rr574834	regulatory region 574834			424 bp proximal
Tssr28695	transcription start site region 28695			176 bp downstream
Tssr28696	transcription start site region 28696			12 bp upstream
Tssr28697	transcription start site region 28697			70 bp upstream
Tssr28698	transcription start site region 28698			80 bp upstream