rs50356956 SNP Detail

Summary

• ID
  rs50356956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:31731626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGTCAG GTTAGGTGGC
  TTCTCTTGGA CGGGGTCTGG TACTCATTGT GTGCCGGTTT AAAAAAAATA ACAACAAAAA
  ACTGCTGTGT GGCATCAGAA TTGGATGGCC AGGCCCAATA TGTAGCCATG AATGCGTACG
  AGTCACTGGA AATGTGCTCA TTTAAGACAA ACACCTCTTG GACCCCCAGC TGTCAAACGA
  R
  TCTAACGGTG TGCCTGCCCA GATCACCAAA AGACTCGTTC CATCCATCCC AGTGACTCAC
  GACGTCCAGA ATATTGTGGT CTCTTATAGG TTGGATGTGA ACCTCCAAGG CAGCTCCTAA
  AAAGATGGTT TATTTGCCCC ACCCACCCAA CACACCCTAG TGAAAGTAAA CTCTTTGATC
  TGATCAGTGT CCTGTTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60257938	NES15756519	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50356956					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257938	NES15756519	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31731626 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm50103	predicted gene, 50103			within coordinates
Rr370216	regulatory region 370216			192 bp downstream
Rr525507	regulatory region 525507			1512 bp distal
Rr525508	regulatory region 525508			290 bp distal
Rr525509	regulatory region 525509			within coordinates
Rr525510	regulatory region 525510			89 bp proximal
Tssr147287	transcription start site region 147287			419 bp upstream
Tssr147288	transcription start site region 147288			328 bp upstream
Wdr4	WD repeat domain 4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant