rs50354270 SNP Detail

Summary

• ID
  rs50354270
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141928246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTTCCCTT TTTCCTCCTC
  CTCCTCCTCC CCACTCTTCC TACCCACCAC ATGGCCTCTT TTCCTTTAAT TTTTTTTTCT
  TAAAAGGTAT GTGTGTGTAA ATAAATCTAT AAATGCAACC TGCTGTGTGT CTCTTTCCTA
  TTGCTTGTAT CGTATGTTCC TCGGGCTGAC CTGAGCACTT GGTATTGGGT AAGCTTGTAG
  M
  GAGCTCATCC ACTGGGAAGA CTGAGTCTCC CTCTCTCAGT AATTGTTGAT TACCTGTAGC
  TCTTTATCTA GGGGTGGACC CACAAGACTT CCCCTTTCCA GTTCGGTGTG CCACCTGGTG
  TTGTCATTGC TCAGGATACA CTTAGCCAAG CCTTCTGTCT GAGTCACTGG GTGAGTTCCC
  TAGCCAGTGT CTGCTTCTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136011377	ENSMUSSNP7187453	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss320999417	CHEV_3_141885449	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50354270					SNP	C	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141928246 () rs orientation: forward

Symbol	Name	Function Class
Rr586397	regulatory region 586397	105 bp proximal
Rr586398	regulatory region 586398	362 bp proximal