rs50351090 SNP Detail

Summary

• ID
  rs50351090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135746940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCACTTCC AGTCTTAGAG
  CTAACCAGTT CCCAGCAGTG ACCCCCTCAT TCTCCACCTA CCACCAATCT ATGGGCTTCA
  TAGTTTTTAC ACTCAAAACC TGATAAAGGA CTGCTAACTT TATCTGTCAT GAAAATTGTT
  TCCAATCCAG TGATAGGAGC AAAAGCTAAG TCATCTCCCA GTAAGGTCTC TAACAAGTGA
  R
  CCTAGAGGCT AGATGAAGGC AGAGTGAATA CATAGTTAAT TTACACTTAA AACACCAAAA
  TCCAATAGCA GGAATCCCAA AAACACAGGT GTGGAATCAG CCTTTTGGCT AATAATGGTC
  TGGAAGCAAG ATTTGGTTGC AAATTCAATA CTGCTCTATA ATCATCTTGC CACTTCACAA
  ACCTGTGAGA GCTTGCTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147555993	ENSMUSSNP5094857	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50351090					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135746940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	1317 bp proximal
Eloa	elongin A	Intron
Gm24362	predicted gene, 24362	1143 bp upstream
Rr602239	regulatory region 602239	962 bp proximal
Tssr44023	transcription start site region 44023	2000 bp downstream