rs50349226 SNP Detail

Summary

• ID
  rs50349226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141789541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTCCAT CTAAGTTCCC
  AACAATCGCT GCCACTGGCT GGCAGAGGTA GTGAACATCC CTGCACTTAA CTCCGAGCCC
  AAATCACGCG CGCACGAACT GCTAGCCTGC TCCTGACCCC TTAGCTGTTC AGCTCTGCAC
  ACAGTCCCTC CTCAGAGTTG CGGGGCAGGG TGGTGCCCCC CGTGGTGGAG CTAAACACCC
  Y
  AACAAGCCTG GCCACAGTGG CTGTGGTGCA GTGACCGAAT GGGGGCAGCC ATCTTTGGAG
  TTTGTGTTGT TAAAACTGAT GCCACATGTG GTTGACACAT GCCAGCATTT CGGAGGTGAA
  AGCAGTAGTT CAAGGGCAGC TTTGACTGCT ATTTTAATTT AAAGACAAAC TGGGCTGCAT
  CACACACACA CACATACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147747827	ENSMUSSNP5645199	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50349226					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141789541 () rs orientation: forward

Symbol	Name	Function Class
D4Mit311	DNA Segment, Chr 4, Massachusetts Institute of Technology 311	161 bp proximal
Rr603976	regulatory region 603976	790 bp distal
Rr603977	regulatory region 603977	543 bp proximal
Tmem51	transmembrane protein 51	Intron