rs50348015 SNP Detail

Summary

• ID
  rs50348015
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119689929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCCCTG GTGTTGAAGC
  TGTGGATGAG TTGGCCTCAA GGGCATGAGA GTAGGAGATC TGGTTCTGTC CCTTGCCAGC
  TATGGCACTT GGGTGAGCTA GCTGGGGTAG TACTGGAGAG AGGTCTCTGG TGGTGTGGAT
  GTGGGAAAGC TGGTAGGCTG CTACCATTCA GGCCCAGATC CAGGGCTTTG AGTTGGCGCA
  A
  CTACCCCATC TATGAACTGC TAGAGTATGT AAACGGGCTG GTCCTGCAGA TCCAAAGCTG
  CAGTATCTCT GTGACACAGG GCAACAATAG GGTATCAGAG AAGAGTTCCC GTAAAGATCC
  AATATTGATA GTGTAGCAGA AGCCAGAGGC CTTGAACCAG ACTAAAGACT CATTGCAAAG
  TATATACTGT GTGATACTGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147336447	ENSMUSSNP359961	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50348015					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119689929 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr377081	regulatory region 377081			7 bp upstream
Rr598660	regulatory region 598660			1880 bp proximal