rs50345540 SNP Detail

Summary

• ID
  rs50345540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181943417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCCACACTCA ATAGTCCCTG GGTTTTAAGC AAATGGCAGA
  CACCTTCCAG CTAAGCTGAG TTCCTGCAGC TTGGAGTCTG GTCTCCTCAG GAAGGGCTGA
  Y
  TCTGAGCCAG TACTTGGCTT GGATCTACTG CACAGCACTG CCCTCCGCTG GTCTGAGCCC
  TTCTGCTGGG AGGGCCTCCT CAGGTTTCCC TCCCTCCTTC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146402243	ENSMUSSNP6098086	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50345540					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181943417 () rs orientation: forward

Symbol	Name	Function Class
Gm33725	predicted gene, 33725	within coordinates
Rr424860	regulatory region 424860	1812 bp distal
Rr424861	regulatory region 424861	1311 bp distal
Rr424862	regulatory region 424862	60 bp distal
Rr424863	regulatory region 424863	422 bp distal
Rr424864	regulatory region 424864	within coordinates
Rr424865	regulatory region 424865	35 bp proximal