rs50343321 SNP Detail

Summary

• ID
  rs50343321
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38334929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAATTCTGA ACACTCTTAA GTGCCACTGT CAACTGCTCA
  AATGCCACCC ATTTGCAGCT TCTGTGCATT TCACATGTTC CACAATCATG GTGGAATGTT
  S
  CAGATTATGT GAGAGTATAG ATCATAGCCA ATTAATGGAA GCTGTGCTGG GTGAATTGGG
  AAGAACATAT CTTAGCATAT CAAGAATTAC AAATGCAAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60391401	NES15888765	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	G	C	G	G		G	C	C	G		C
ss134829283	ENSMUSSNP6328118	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320717647	CHEV_3_38179702	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50343321					SNP	C	C	C	G	C	C	G	C	G	G	C	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60391401	NES15888765	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38334929 () rs orientation: forward

Symbol	Name	Function Class
Rr575652	regulatory region 575652	102 bp distal
Rr575653	regulatory region 575653	871 bp proximal