rs50342481 SNP Detail

Summary

• ID
  rs50342481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18817860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATATAT ACTGAATCTT
  TTCAACAATT TCTCTTTTAA AAGTTTAATT TTCAAATTTT TCTCTTTCCT ATATGTGTGT
  GTCTGTATAT GCCATCTAAG TGCGGTGTCC TTTGAGGCCA TAAGAAAGCA TTGGAATCCC
  TAGAGCTGGA GTTAAAGGAG GTTGAGAGTC ACCCAGTGTG GGAGCCAGCA ACCAAACGTG
  R
  GTCCTCTGAT GTTGTGGTTT TAATGACAAT GGTATCTCTT CCTGTATGCT AAGAAAGAGA
  TAGCTGATTT TTCCATGAGT GGGTGAACAG GGCGTGGGGA GTAGAGATTG CTTTAATGAG
  ACTGTTATGT TTGAATAATT GGAATAATCA TCATCAGTTG CTGGAACTGT TTGGGAAGAA
  TTGGAGGAGT GGTGCTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133041722	ENSMUSSNP5614750	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50342481					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18817860 () rs orientation: forward

Symbol	Name	Function Class
Rr626951	regulatory region 626951	1565 bp proximal
Rr626952	regulatory region 626952	1691 bp proximal