rs50340225 SNP Detail

Summary

• ID
  rs50340225
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147516047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TCCTAAAGGG CAAGAAAGCA CTGTTAACAT TCTAGAGTTT
  CTCTGAACTT CTAGACCTGG TTGATAAAGA TTCTAGTTAC CGCGCACAAA GGAAAATCCA
  G
  AGAAGCAGTG AGAAATTGTA TTCTGGGGCT TAGGCACCTC TGCATCCATT TGCTTATGTG
  CATCATTACA CTAAATGTAA GGATTCCAGC CAGAGTTCTG G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147959966	ENSMUSSNP5098198	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50340225					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147516047 () rs orientation: forward

Symbol	Name	Function Class
Rr398816	regulatory region 398816	1173 bp downstream
Rr398817	regulatory region 398817	300 bp downstream
Rr604487	regulatory region 604487	565 bp proximal