rs50339113 SNP Detail

Summary

• ID
  rs50339113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34520748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTGTGC ATGCACTTCA
  GCTCATTTAA GTCAACAAAT GCACGTGAAC ATTTATGGGC CAAATGCTTC TATAGCACTG
  AGGATGTAGC TGTGAACAAA TGAGCCAAGG GCAGCCCCAG AGCTCATGTT CACAAACAGG
  CCAGTGTGTG AATAGCCTCC CAAGCACACT CCTGCTGGGA TGGTGGCTCT GTGAGCATCT
  Y
  AGCTCCACCT GACTGCACTT ATGTAAGCAA TGTGAAGGAC ACAAAGCTAG CCTTGGAAAC
  TACAGACCAG TGAGTACACA GCAACTCACA ATCCCCCAGA ACTCCAAGAT CTAACAGCCT
  CTTCTGACTT GGTGGCCACC AGGCATATAC ATGCAGGCAA ATACGGAAAA TAAAACTGCA
  GGACCCTTAA AAACAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60386393	NES15889044	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50339113					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60386393	NES15889044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34520748 () rs orientation: forward

Symbol	Name	Function Class
Rr575137	regulatory region 575137	665 bp distal
Rr575138	regulatory region 575138	within coordinates