rs50338059 SNP Detail

Summary

• ID
  rs50338059
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147516249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAGTTTAGGG ATACCACAGT CTGACTCCAA GACATGGCCT
  CTGAATAGGC ATCTGCACAA GCTGGTTCAG CCATGGCGCT GGGAGCAAAT GTGCAGAATG
  C
  ATGGCTGATA TGTCCAGGCT TCCTCTTCTC CAGAAATCAT TTTATCTAGG GAGCCAGAAA
  GCCCCATGGA AGACCTGAAG CACAGGCAGG TATCCTCCAC C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147960000	ENSMUSSNP574301	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs50338059					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147516249 () rs orientation: forward

Symbol	Name	Function Class
Rr398816	regulatory region 398816	1375 bp downstream
Rr398817	regulatory region 398817	502 bp downstream
Rr604487	regulatory region 604487	363 bp proximal