rs50337140 SNP Detail

Summary

• ID
  rs50337140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127624957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTAGTT ACTGAGGAAC
  ACGAACACAA ATTCTTCCCT TGAATCTAGC CACCATAGAA AGCTTGCTTC CAGTGGTAGG
  AACCACAAGA GTCTGAGGGA GCTGCGAGGG GAGGGGGTGA GGCAGAGTGA GCACGTGAAT
  GATGCATGCA ATCAACCTGA GGCTGCGGGT AAGGCCGTGG GAGCTGGGCC TGGGGTGCTG
  Y
  CCCCTGGAGA AGCAGATAAG CAAATACCTG GAAGATAAAG CAGAATCTGA TCTAGGAGAA
  GGGTTAGACA ATGAGACGCA GGGAGGCAGG GTCAGAATTG AATGGTGCTA CAGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGAGTTC ACCACACAAA GTAAACATAG TAAGTCAAAG
  ATGCAAGGGT AAGATACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135872357	ENSMUSSNP2028557	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320957273	CHEV_3_127534226	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50337140					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127624957 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	within coordinates
Rr584871	regulatory region 584871	747 bp distal
Rr584872	regulatory region 584872	within coordinates