rs50323806 SNP Detail

Summary

• ID
  rs50323806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152048298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGTCCCA GTGAGAGAGC
  AGCCGTGAGG ACACATACGG AGCAGATAAG GGGGCGGGGA CCTCAAACTG AAGGTCAAGG
  GCCTGTGGCT GGGAAGACGA TCCCTTGGGC AGAATAGCTC AGAACCTCCC CTGCCTGGGC
  TTACAGCTTG CTAATATACG TAATAAATAG GTCATTGTGT TGATTATTTG GGAGTGAGAA
  Y
  GGAGACAGAT AAGGCATCAT TCTTAAATTA CAGCCTACAG TGCCCAGAAA AGAAATCATG
  ATTCCTGTCC CACCCTGCCC CTAGTGTTAG GGGTAGACTC TAGGACTTCA CGCCAGGCAA
  GTTCTCTGCA ACTGGGTTAC ATCCCTTGCT CAATTGTAAG TGTTTATTTC ATTTTTTAAG
  CTTTTGTGTG TATTGGTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136102530	ENSMUSSNP2632826	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321028688	CHEV_3_152005625	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50323806					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152048298 () rs orientation: forward

Symbol	Name	Function Class
Rr587532	regulatory region 587532	1764 bp distal
Rr587533	regulatory region 587533	296 bp proximal