rs50322515 SNP Detail

Summary

• ID
  rs50322515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19717864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGAGTGA GGGAAACAAG
  TTGATTCTGG CTGTGTTAGG AAGGGCAACA GGCGCTTTCA CAGAGGCCAG CCAGGGTCTT
  AGAAGGAAGC AGCTGTCTCT AGCTACACTT GAGAGCAAGC CAAGAAAGTA CAGGATTAAA
  GCTAAATCAG CAGAAGGTGT TTAGTTAGGG ACAATATGAA GAGCAGCCAA GGTCAGAATT
  R
  TCACCCTTTC TTACTGGTAA TGACTATCCA ACAGCTACAG ATTTCTAACA AAGGTATATT
  ACCACTACTT CCAATTCATT AAGATGTTGG TGGTCTTTAA ACTTCTCACT TTCATACCAG
  GTTTGGTGAC ACACACTTCT AATCTCAGCT ACTCAGGAAG GTGTGTCAGG AGGATTAGAA
  GTTCTAGAGT AGCCTGTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376655	NES15883799	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50322515					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376655	NES15883799	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19717864 () rs orientation: forward

Symbol	Name	Function Class
Rr574018	regulatory region 574018	19 bp distal
Rr574019	regulatory region 574019	742 bp proximal
Trim55	tripartite motif-containing 55	Intron