rs50320743 SNP Detail

Summary

• ID
  rs50320743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151767351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAATCAA CAGAAACAAG
  AACCTCCTGA CACGTGAAGT GCTTGAAAAA GGCAGGTCAC CGCGCAGGGT GCTGAGCATT
  CAGATTTCGA CACGTTCGCA CACGGGCTAA AGCTGAGAGA AGGGACTCAG AGGTACTGAG
  CCCGGCAGCC GTTCTCTCAA CAGGGGACAG GGGAAGGGGT GAAGGAGACA ATGAACAAAG
  Y
  GATACATCCT GACCTCATGG AGTCCAGGGG TCAGCAGTCA CCAAGAGGGA AGTGCTGATG
  AGGAAGGACT TGTAATCAGC TTTTTACAGC ACTGTCACTC CAAAGCAATG AGAGACACAA
  CGAACAGACT CAATGTGCGC ATGCGCCAAC CAAGAGCCTG TGAGTTGGTC TGCATCTCCT
  AAATGCACCA CTTGTGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148075615	ENSMUSSNP223347	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50320743					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151767351 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Gm38442	predicted gene, 38442			within coordinates
Rr605620	regulatory region 605620			592 bp distal
Rr605621	regulatory region 605621			396 bp proximal