rs50318114 SNP Detail

Summary

• ID
  rs50318114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCGTCTGT GGATCTGATA
  ATCATAGGCT CAAACCTCAG AGCTGTGCCC CTCACTTGTG TGACCTTAGA CTCTCAAGGA
  CTCCTTTTCC CTGTTTGTGG AATAGAGACA CTCGGGTCCT GCCTGTATGC TCTTGGGGAG
  TATCTTGTGC TGCCCCACCA TCATGAACTC AGATCAGGAT TTCCCAGTAG CCTGTGTGTG
  Y
  AGTTGCTCAG AGCAGAAAAG GGGAAAGAAA GCGCTTGGAG GTAGAGCAGT GTTGAGAGGG
  GAGTGCAGGT GGGTTTACTC TATCCTCCCA TCGCCTGTTG GGGGAGGGCA TACTCGGCCT
  TATATGGAGG TGGGTGGCAA TTTTTAGGAG TATCTCCTTC TATGGATTTC AGGAAATAAA
  CTCTGGTCCT AGTGCTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147115224	ENSMUSSNP588496	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320438733	CHEV_2_102389442	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50318114					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379630 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	727 bp upstream
Rr561703	regulatory region 561703	346 bp proximal
Rr561704	regulatory region 561704	1618 bp proximal
Tssr19094	transcription start site region 19094	760 bp upstream
Tssr19095	transcription start site region 19095	814 bp upstream
Tssr19096	transcription start site region 19096	832 bp upstream
Tssr19097	transcription start site region 19097	853 bp upstream