rs50316875 SNP Detail

Summary

• ID
  rs50316875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137118111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC CTTCTTCTGC ACCCCTCAGG
  Y
  ACTATGTGCA TGTGGCACAC ATTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147604116	ENSMUSSNP2505771	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321363495	CHEV_4_136946715	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50316875					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137118111 () rs orientation: forward

Symbol	Name	Function Class
Gm52681	predicted gene, 52681	within coordinates
Gm69281	predicted gene, 69281	1856 bp downstream
Rr377264	regulatory region 377264	1469 bp downstream
Rr602610	regulatory region 602610	1582 bp distal
Rr602611	regulatory region 602611	697 bp proximal