rs50314945 SNP Detail

Summary

• ID
  rs50314945
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153084802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGATGATA GCCAAATGTG CTTGCATACA ACTTTAATCT
  CAGCACTAGA AGCCAGAGGC AGGTGGATTT CTGTGAGTTT AAGGCCAACC TGATCACATA
  A
  AGAATTCCAG AGTAGCCAGG GCTACATAGT GAGACTCTGG CAAAACAAAA CAAACAAAAA
  CCAGATAGAC CTTTGTGTTT AAAGCATTCA CAGCCTGCA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147988465	ENSMUSSNP3604328	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50314945					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153084802 () rs orientation: forward

Symbol	Name	Function Class
Plagl2	pleiomorphic adenoma gene-like 2	1524 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	1467 bp distal
Rr567589	regulatory region 567589	1294 bp distal
Rr567590	regulatory region 567590	905 bp distal
Tssr20880	transcription start site region 20880	1956 bp downstream
Tssr20881	transcription start site region 20881	1939 bp downstream
Tssr20882	transcription start site region 20882	1416 bp downstream
Tssr20883	transcription start site region 20883	1279 bp downstream
Tssr20884	transcription start site region 20884	1264 bp downstream
Tssr26895	transcription start site region 26895	1528 bp upstream
Tssr26896	transcription start site region 26896	1488 bp upstream
Tssr26897	transcription start site region 26897	1471 bp upstream
Tssr26898	transcription start site region 26898	1382 bp upstream
Tssr26899	transcription start site region 26899	1158 bp upstream