rs50313136 SNP Detail

Summary

• ID
  rs50313136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:92267170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTTGAGC ACACAACAAA
  CCCATTCAAA TTATGACCTA CAACTAAAAG GTCTCATTTA CTTTAAAGTA CAGAGCGTTC
  TTTTTAAATG CCCATGTTTT TAAACATAAA CTCAGGGACA AATGCTAATT CTTGGGAGAC
  AGTGTCTTTA TGCTGACCTC GGTGGGCAAA CATTCTCAAG ACCTAAACTA CAACGCATGA
  Y
  TGACAAGGAC CAACAAACGC GTCCGTCTTG GTAGTGGGAT TGGTGCCCAG AACTACGGGT
  AAGCCATCAC TGGCAGGTAA AGAACTCTGC CGGTCCGGAG CCAGTGAAAA AAGAAACCAA
  ACTTTCCGAA ATAGGGTAGT TTGGTCTCAC CAAACCAATC TAAATCCAAC AGGTGTCAAC
  AGACACTTGC CACATTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52681583	NES15521840	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50313136					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52681583	NES15521840	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92267170 () rs orientation: forward

Symbol	Name	Function Class
Rasgrf2	RAS protein-specific guanine nucleotide-releasing factor 2	Intron
Rr483653	regulatory region 483653	984 bp proximal
Tssr4138	transcription start site region 4138	885 bp downstream
Tssr123423	transcription start site region 123423	945 bp downstream
Tssr123424	transcription start site region 123424	1136 bp downstream
Tssr123425	transcription start site region 123425	1156 bp downstream
Tssr123426	transcription start site region 123426	1187 bp downstream
Tssr123427	transcription start site region 123427	1215 bp downstream