rs50312642 SNP Detail

Summary

• ID
  rs50312642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:43507976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGCCCC TTTTCCAGGT
  ATTTTTAAAT CTGCCTTATA GACTGGTATT CAATAAACCT TGTTCCATAC TTTTTGTCCA
  GGATTTGATA ATGGGAATTC AGAGTGAGGT CCCATATCTA AGGGAGCAGC TCCACTCTCC
  CCTGGCTTTC CTAAACAGTT CTTTTTCTTT TGTGTAAGCA AAGACTTACA ATTTTCATCT
  R
  TTTACAACTC TAGGCATATT ATAATTTTAC TTCTCCATAG TTGTTTGAGG AGAACTTGAA
  AAACCATTTT GAGAAGGGTT AGGTTTTCAC CAATAGGGGA TTTCAGAGGA GCCACTAACT
  ACACAGAAAC TAAGAGTAAA GAGGGGATAG GCCCTATTCT TAGTTAGAGC ATTAAACAGA
  AGAGAATGTT CAGGAATATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52393751	NES15382211	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50312642					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52393751	NES15382211	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:43507976 () rs orientation: forward

Symbol	Name	Function Class
Tssr113357	transcription start site region 113357	1023 bp downstream