rs50311399 SNP Detail

Summary

• ID
  rs50311399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141981334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGCACTT TGTATCTTAT
  AAGACACTGT CCTGTCACAT TCCAATTACA TCAAAGCCAT TTTTTTTTCT TAGTTATTTT
  GGTACTAAAA ACACATGCAA GATAACTACA GCGAGTCCCT GTCACAATAT ACGGGCTTGA
  AGTGGATGGA AATAGCTCTA TACTGCTATG CTTTATCACT ATCTTCCTCC CAAAGAAATC
  R
  GTCGTGCTAT GGCAATGACC CACAAGTGTC AGAGGCTAGT CTGAACACTT TGCTTCTAGA
  AATAATTTAG CCCTCTAATT CTTGTAAAGA TCTCTATATT ATATATAATG GCCTATCTTC
  TTTCCCTGAA AACACAGATA CAGTCAGCCC TCCATTCTGA AGTTTCTATA TTGGATAAAA
  AGTATCTGAG GGGGAAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61087912	NES16611970	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50311399					SNP	G	G	A	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087912	NES16611970	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141981334 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	171 bp downstream
Rr586404	regulatory region 586404	797 bp distal
Rr586405	regulatory region 586405	236 bp distal
Rr586406	regulatory region 586406	320 bp distal