rs50309616 SNP Detail

Summary

• ID
  rs50309616
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT TTTAAAGATG ATGAGTTTAC
  K
  TTTGAATAGG CTGTGCTGGT GCACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60932517	NES16191108	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	T	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50309616					SNP	G	G	G	G	G	G	T	G	T	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932517	NES16191108	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149411 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1827 bp distal
Rr637288	regulatory region 637288	within coordinates
Rr637289	regulatory region 637289	1416 bp proximal
Rr637290	regulatory region 637290	1601 bp proximal
Rr637291	regulatory region 637291	1652 bp proximal
Tssr58392	transcription start site region 58392	963 bp downstream
Tssr58393	transcription start site region 58393	944 bp downstream
Tssr58394	transcription start site region 58394	904 bp downstream
Tssr58395	transcription start site region 58395	1042 bp upstream
Tssr58396	transcription start site region 58396	1058 bp upstream
Tssr58397	transcription start site region 58397	1096 bp upstream
Tssr58398	transcription start site region 58398	1122 bp upstream
Tssr58399	transcription start site region 58399	1144 bp upstream
Tssr58400	transcription start site region 58400	1172 bp upstream
Tssr58401	transcription start site region 58401	1208 bp upstream
Tssr58402	transcription start site region 58402	1239 bp upstream
Tssr58403	transcription start site region 58403	1257 bp upstream
Tssr58404	transcription start site region 58404	1276 bp upstream
Tssr58405	transcription start site region 58405	1318 bp upstream
Tssr58406	transcription start site region 58406	1348 bp upstream
Tssr58407	transcription start site region 58407	1379 bp upstream
Tssr58408	transcription start site region 58408	1446 bp upstream
Tssr58409	transcription start site region 58409	1468 bp upstream
Tssr58410	transcription start site region 58410	1490 bp upstream
Tssr58411	transcription start site region 58411	1506 bp upstream
Tssr58412	transcription start site region 58412	1533 bp upstream
Tssr58413	transcription start site region 58413	1546 bp upstream
Tssr58414	transcription start site region 58414	1579 bp upstream
Tssr58415	transcription start site region 58415	1594 bp upstream
Tssr58416	transcription start site region 58416	1609 bp upstream
Tssr58417	transcription start site region 58417	1663 bp upstream
Tssr58418	transcription start site region 58418	1696 bp upstream
Tssr58419	transcription start site region 58419	1715 bp upstream
Tssr58420	transcription start site region 58420	1742 bp upstream
Tssr58421	transcription start site region 58421	1761 bp upstream
Tssr58422	transcription start site region 58422	1787 bp upstream
Tssr58423	transcription start site region 58423	1795 bp upstream
Tssr58424	transcription start site region 58424	1857 bp upstream
Tssr58425	transcription start site region 58425	1902 bp upstream
Tssr58426	transcription start site region 58426	1924 bp upstream
Tssr58427	transcription start site region 58427	1951 bp upstream
Tssr58428	transcription start site region 58428	1966 bp upstream
Tssr62617	transcription start site region 62617	1106 bp downstream
Tssr62618	transcription start site region 62618	1128 bp downstream
Tssr62619	transcription start site region 62619	1164 bp downstream
Tssr62620	transcription start site region 62620	1207 bp downstream
Tssr62621	transcription start site region 62621	1273 bp downstream
Tssr62622	transcription start site region 62622	1825 bp downstream
Tssr62623	transcription start site region 62623	1843 bp downstream
Tssr62624	transcription start site region 62624	1958 bp downstream