rs50307322 SNP Detail

Summary

• ID
  rs50307322
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36666748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA AACCTGCTTG GTGCATGTAT
  G
  ACTATTCTGA ATTTTTAGGC ACGCT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134784788	ENSMUSSNP6713405	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50307322					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36666748 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	Intron
Cpgi13088	CpG island 13088	497 bp proximal
Rr575383	regulatory region 575383	22 bp proximal
Rr575384	regulatory region 575384	676 bp proximal
Rr575385	regulatory region 575385	829 bp proximal
Tssr28874	transcription start site region 28874	883 bp upstream
Tssr33039	transcription start site region 33039	740 bp downstream
Tssr33040	transcription start site region 33040	771 bp downstream
Tssr33041	transcription start site region 33041	819 bp downstream
Tssr33042	transcription start site region 33042	862 bp downstream
Tssr33043	transcription start site region 33043	890 bp downstream