rs50304536 SNP Detail

Summary

• ID
  rs50304536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118699980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGCAGTGT GGTGGCTTCT GTCTTAATCC TAACAGTTCA
  GCCTTTGAGT ATTTGCTGGG TGCTAGCCTC TCTCTCATGT TTCACATTAT GAACTGAGAA
  Y
  GCCATGAGTA AGGTATCACA GCCCATTTTG TAGATGAGGA AACCGAGGCT TGGGATTCAA
  TCACTTATTC AAAGTAAGTG GCTAAGTAGG ACTGAGGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133584979	ENSMUSSNP2687740	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321925835	CHEV_6_118673037	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50304536					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118699980 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637507	regulatory region 637507			1694 bp proximal