rs50302829 SNP Detail

Summary

• ID
  rs50302829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144921470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCGGGCTC CGGGAGAGGC CGGCTGCCGC GGACCCCGAG
  TCGGGCCGTC GGAGCACAGC CAGGTCGATC GCGTGGCCGC TTTCCTTGAG GTCCTCCGCC
  Y
  TGACCGCCGC CCCCCTACCT GTCGCTGTAG CTGTAGCTAC CGCTGTCGCT GTCGCTGCCG
  CCCAAGCCCG GTTCTGCGAG GTGCTTCCTC TCCGCCACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147848392	ENSMUSSNP6568792	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321412789	CHEV_4_144784803	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50302829					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144921470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398672	regulatory region 398672			17 bp upstream
Rr604318	regulatory region 604318			1683 bp distal
Rr604319	regulatory region 604319			within coordinates
Rr604320	regulatory region 604320			531 bp distal
Rr604321	regulatory region 604321			95 bp proximal
Rr604322	regulatory region 604322			187 bp proximal
Rr604323	regulatory region 604323			1795 bp proximal
Tssr44481	transcription start site region 44481			53 bp downstream
Tssr44482	transcription start site region 44482			67 bp downstream
Tssr44483	transcription start site region 44483			99 bp downstream
Vps13d	vacuolar protein sorting 13D			Intron
				Noncoding-Transcript-Variant