rs50301983 SNP Detail

Summary

• ID
  rs50301983
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146559785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACTTACT CTTAAGTGCT
  TGCTTCTCTT ACTAAATAAA ACATGTATGT GTTACAGTAG GATGGAGTCA TGAACAGTGG
  GAAGTGCTTT TGTTAGTTGA TGCTCTGCCC TCCAGAGTCA ACAATCATAC TGACCTTGTA
  TGCTCCTTCT GCAAAAATAG TGGACACCAG GTCTCTCCTT CTCCTCGGGC AGGTCCTTTG
  W
  CCTGATTTCA TTTATGATTT ATGGATTATC TCTTTAAGAT GTGTGACTCT TGCCGATGTC
  GCCGGTGTCA GATTGCTAAT GTACAGATGG TATGGATTTC CAAGTCCTGG CAGAGTGTTT
  GATGGCACAC AAGAACACAG CCATTTAGTC CATCACTTAT AAAGCACTGG ACCAATTGAT
  CTGGAGAGTT TTTGTTTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61097588	NES16606792	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50301983					SNP	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097588	NES16606792	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146559785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13925	CpG island 13925	1367 bp distal
Gm65628	predicted gene, 65628	1364 bp upstream
Rr587096	regulatory region 587096	1653 bp distal
Rr587097	regulatory region 587097	1375 bp distal
Rr587098	regulatory region 587098	1054 bp distal
Tssr32369	transcription start site region 32369	1592 bp downstream
Ttll7	tubulin tyrosine ligase-like family, member 7	Intron