rs50280661 SNP Detail

Summary

• ID
  rs50280661
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95949459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAGTCTA CAGTAATAAG
  TACTGTATCA AAACCAAAAT AGAAGGATGC AAACCAAACA CAAACAAGCA GCTAGCTGGG
  CATGATAACC CCCATCTGGA ATTCCATCAC TTGGGAGGTG AAGGCAGGAC CTCCTAAGCT
  CCAGCATGAG TTACATAGCA GTTACCAGCC AGTTCCACAA AACTCAAAAA CAAGCAAAGA
  A
  TCACGGTAGA AATTAGATCT GGACTATTCC AGAAGTTATG CCTCCATCAA CAGTCTAAAG
  TGTCATATAT AAAGAGTCCT GGTAGAAATG AGACCTGGAA TATTGCAGAG ATGATGCCTA
  CATCAATAGT CATAGGTCAG TCATCCACGC GTATGATGTA CCTTCATGTC TGCTATGGAT
  TCCAGCTTTT GCTGCTCTTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135513610	ENSMUSSNP6736102	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50280661					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95949459 () rs orientation: forward

Symbol	Name	Function Class
D3Umi26	DNA segment, Chr 3, University of Michigan 26	737 bp proximal
Rr581123	regulatory region 581123	1096 bp distal
Rr581124	regulatory region 581124	1045 bp proximal
Vps45	vacuolar protein sorting 45	Intron