rs50277885 SNP Detail

Summary

• ID
  rs50277885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41363079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACA AACATGCTGA AATTTTAATA
  R
  TCCATTATAT AAGTATGTTA GTAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60600935	NES16305469	PERLEGEN	MM_PANEL2	f	SNP	A	A		A		G	A	A		A
ss144675504	ENSMUSSNP902660	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss322633648	CHEV_8_41995396	CHEVERUD	SCREENING_POP	f	SNP					A				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs50277885					SNP	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600935	NES16305469	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41363079 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77031	transcription start site region 77031	1877 bp downstream
Tssr77032	transcription start site region 77032	1622 bp downstream
Tssr77033	transcription start site region 77033	1363 bp downstream
Tssr77034	transcription start site region 77034	1300 bp downstream
Tssr77035	transcription start site region 77035	366 bp downstream
Tssr77036	transcription start site region 77036	773 bp upstream
Tssr77037	transcription start site region 77037	968 bp upstream