rs50266486 SNP Detail

Summary

• ID
  rs50266486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71696000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAC ACACAAAACC ATCCAGTACA
  Y
  GTCCTAATTT TTTCCCCATC TCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146751435	ENSMUSSNP4027996	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50266486					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71696000 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	1219 bp downstream
Rr370575	regulatory region 370575	885 bp upstream
Rr558851	regulatory region 558851	1725 bp distal
Rr558852	regulatory region 558852	320 bp proximal
Rr558853	regulatory region 558853	744 bp proximal
Rr558854	regulatory region 558854	1886 bp proximal
Tssr18292	transcription start site region 18292	471 bp upstream
Tssr24499	transcription start site region 24499	1895 bp downstream