rs50265842 SNP Detail

Summary

• ID
  rs50265842
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153428204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACCCTGG CTTGTGTCAA
  GTTCACAAAA AACTAATCAG AACACCCCTT CTATGAGTAT TTCATACACA GAAATACAGA
  CAAACACGCA CGGAAGACAT AAATTATGTG TGTTATATGT GTGTGTATGT ATAATTTATC
  TATATAAGTT GCACACATAC ATAAATACAC AGGAGGCATA CATATATGTA CATTCACAGA
  M
  GACATGAATA TCAGATAAAA TACAAATACT ACATATGCTG TTCCCCTACT AATCTGCCCC
  CTGAAGGTTT GATCATAGGG CCAGGCTGTT TCCAATACTT AACTAGGTTC AGGGCTTTGC
  AAAAATATAT ATATATATTT CGTTAAAACA ATGAGAAGTC TATCGTTTTC TATTTGCTAC
  AACACTGTTA AAACCAATTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136111677	ENSMUSSNP3550667	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50265842					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153428204 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587739	regulatory region 587739			1036 bp proximal
Rr587740	regulatory region 587740			1482 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			1338 bp upstream
Tssr36239	transcription start site region 36239			1510 bp upstream