rs50256644 SNP Detail

Summary

• ID
  rs50256644
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18417820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATAAATT ATTAATCAAG
  GTAATGCCCT ACACATTTCC TACAGGCTCA CAGGCCAATC AGAGGGAAGT AATTTCTTAA
  TCAAGGTTCC CTCTTCTTAG GTGACTCTAA TTCCTGTCAA GTTGATAAAA CTAAACTATA
  TTCTCATCGG GTATTTCCCC TTGGTGTTTG CTTCCCTGCT GGGTTTACTC TAGTGACTCC
  G
  AGACTCCACT GTCTCCTGTT TATTAAAAGC TCATGACATT TTCAGCTTCA GCTGTGGCTT
  TTGCAGGAAC AAGTCCTAAA TGTGCATCCC CACATTGTTT CCAGTTGAAT AGCCTCTACC
  TACACTTGCA TATAGATAAC AATAAAACTC TAGGATCTGC GTAAGAGAGA GAATGGCCAC
  GTGTTTGTTT CTGAGTCTGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss133034520	ENSMUSSNP1904907	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50256644					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18417820 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr379006	regulatory region 379006			232 bp upstream
Rr626921	regulatory region 626921			78 bp proximal