rs50253719 SNP Detail

Summary

• ID
  rs50253719
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:89603597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACAGGG TGATTGAAAT
  AGTGTTTGAG GAAACTGTTA GGTCTCTCAG AATGTCAGAC ATAGAGAACT ACCACCACCC
  CACACCTCAA CCCGCATCCT AACCCTCTCT CTAGCCAGTC TTGCGGCCAT TCTGAACTGG
  AAGCCAGCTG CAGTCTCAGT CTGTGCTCTA CCACTTCCAA CCAGCAGGGG GCATGCCCAG
  M
  CTCCATCGGA TCATAGCATG GCTCCCGCTG ACGCAGTTGT GGCTCCGGAT GCCACACTTG
  GTGTGGTAGA ATAGGGAACC ACAGATGAAG CATGTCCTGG CAAATACTTT GTAAATGTAT
  TTTACATGGC TCTGGGTCTT GTCTGGTCTA CAGGACACGG GCTATACGAC TTGAGGGAAC
  TGATTTGATC TCTCTCTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61194476	NES16707133	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50253719					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194476	NES16707133	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89603597 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	Intron
Rr614258	regulatory region 614258	within coordinates
Rr614259	regulatory region 614259	3 bp distal