rs50251235 SNP Detail

Summary

• ID
  rs50251235
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135679816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGACCACGG CTGCCTTTCG
  TTACCAGTGT GGCTGACTTC CTTTTCTGGG TTTCTGTCTA CCACAGAGTA TTGTACCCAC
  CCCAGTGAAG ATCAGGCTGA TCGACATGCT TTCCGAAGCA GGGCTCCCCG TGATCGAGGC
  CACCAGCTTT GTTTCTCCCA AGTGGGTGCC ACAGGTGAGC CCAGGCTCTG GGAGGAGCCT
  S
  TTCCAGGTGG GAGGAGCCTG TTCCAGGTGG GAGGGAGGGA GGGAAGTGTC CCATTTGCTC
  TTGTAGCCTC TGGAAGCGTA GCTTTCCATG TCCCTGGCTT GAGGGCTCTC AGGTGAATCT
  GAGCACTGTG TAGCATGGGA AGAACTCGAC CTGGGAGCCA TGGGCTTTGA TTCATTCTGG
  GCTCTGACCT GGCTTACTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147554647	ENSMUSSNP5074187	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50251235					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135679816 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr398602	regulatory region 398602			1798 bp upstream
Rr602216	regulatory region 602216			803 bp distal
Rr602217	regulatory region 602217			690 bp proximal
Rr602218	regulatory region 602218			1833 bp proximal
Rr602219	regulatory region 602219			1934 bp proximal