rs50249545 SNP Detail

Summary

• ID
  rs50249545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97984335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTATGAG AGAGAAGAGC
  CCCTCTCTGT TCTATTAGCC AGGAGAAAGC ATCGCTAGTT TTCAGGTAGG TGCTGTTTTC
  CTGACCTTTC CAAAGAAGCT AGGTGCACAT CCTCCTGCTC AGGTCCCCAC AGAGCCTTCG
  CTCAGCATTG TCAGTAATCG CAGATGGGCT CGGCTCTCAG CTGGAGAGCT GTGAATACAG
  Y
  CTTCAAGTCT TGGCTAATTC CTGGGAAGTA ATTCTCAGGG TCCTGTTGAC CTTGACTCAG
  CCCTGCCTTT CTAGGATTTA GCTTGTAACA ATACTTACTT GCTGAAATGT GCAATACTTA
  ATACTTAATA CGTTCAGTTA TTCTTTCCAC CACTACAAGT TATTGAGCTC CATTTTGATA
  CAAGGAACTT TCTGTAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60914471	NES16220698	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50249545					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60914471	NES16220698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97984335 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635255	regulatory region 635255	1523 bp distal
Rr635256	regulatory region 635256	1600 bp distal