rs50248347 SNP Detail

Summary

• ID
  rs50248347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20561650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATCCAC ACTTTGGTCT
  TCCTTCTTGA GTTTCATGTG GTCTGTGAAT TGTATCTTGG GTAGTCTGAG ATTCTGGGTT
  AATATCTACT TATCATTGAG TGCATACCTT ATGTGTTTTT TTGTGATTGG GTTACCTCAC
  TCAGGGTGAT ATTTTCTAGT TCCATCCATT TTCCTAAGAC TTTCATGAAA TCATTGTTTT
  Y
  AATAGCTGAG TAGTACTCCA TTGTGTAAAT GTATCACATT TTCTGTATCC ATTACACTGT
  TGAAGGCCTT CTGGGTTGTT TCCAGCTTCT GGCTATTTTA AATAAGGCTA TTATAAATAA
  GGATCATATG TCCTTATTGG AGCATCTTCT GGGTATATGC CCAGGAGTGG CATTGCTGGA
  TCCTCAGATA GTACTATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134672186	ENSMUSSNP1371546	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50248347					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20561650 () rs orientation: forward

Symbol	Name	Function Class
Gm31466	predicted gene, 31466	1280 bp upstream
Rr574081	regulatory region 574081	1773 bp proximal
Rr574082	regulatory region 574082	1902 bp proximal
Tssr32748	transcription start site region 32748	1276 bp upstream
Tssr32749	transcription start site region 32749	1261 bp upstream